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2026 Supreme(Online)(Ker) 28328

IN THE HIGH COURT OF KERALA AT ERNAKULAM
ZIYAD RAHMAN A.A., J
RAMACHANDRAN G – Appellant
Versus
SUPERINTENDENT OF CENTRAL TAX AND CENTRAL EXCISE RANGE 3 – Respondent
WP(C) NO. 15010 OF 2026



Advocates:
For the Appellants/Petitioners: SRI.R.JAIKRISHNA, KUM.NARAYANI HARIKRISHNAN, SRI.C.S.ARUN SHANKAR, SHRI.ANISH P., SHRI.AKHIL SHAJI, SHRI.K.SURESH CHANDRAN
For the Respondents: SHRI.V.GIRISHKUMAR, SC

Section 16(5) CGST Act overrides Sec.16(4) via non-obstante clause, allowing ITC if return filed by cutoff date.

Headnote:The petitioner challenged an order under Section 73 of the CGST Act, 2017, denying input tax credit for March 2020 due to late filing beyond Section 16(4) timeline. Court examined Section 16(5), introduced by Finance Act, 2024, which overrides Section 16(4) via non-obstante clause, allowing credit if returns filed by specified cutoff. Facts confirmed return filed on 16.05.2021 within Section 16(5) limit. Court found merit in petitioner's claim, holding Section 16(5) entitlement prevails. Issue framed: Whether Section 16(5) entitles input tax credit despite Section 16(4) violation. Ratio: Section 16(5) non-obstante clause renders Section 16(4) insignificant if returns filed timely under new provision; order quashed for non-consideration of Section 16(5). Writ petition disposed, Ext.P1 quashed; respondent directed to reconsider and grant benefits under Section 16(5) within three months after hearing petitioner.

Table of Content
1. challenges assessment order denying itc for late return under sec.16(4). (Para 1)
2. sec.16(5) non-obstante overrides sec.16(4), entitling timely filed itc. (Para 2)

J U D G M E N T

The petitioner is an assessee under the provisions of CGST/SGST Act 2017. The challenge in this writ petition is raised against Ext.P1 order in original passed under Sec.73 of the CGST Act. As per the said order, the input tax credit claimed by the petitioner, pertaining to the month of March 2020 was declined on the reason that, the petitioner failed to submit the return within in the period stipulated under Sec.16(4) of the CGST Act. The challenge is raised against Ext.P1 mainly on the ground that, by virtue of Sec.16(5) of the CGST Act, which is newly introduced, the petitioner is entitled to claim the input tax credit.

2. After hearing the learned counsel for the petitioner and the learned Government Pleader, I find merits in the said submission made by the learned counsel for the petitioner. In this case, it is discernible from Ext.P1 order itself that, the petitioner had submitted return for the the March 2020, on 16.05.2021 and therefore, the petitioner had filed the return before the cutoff date, contemplated under Sec.16(5) of the Act. Since the Sec.16(5) contains a non obstante clause as against Sec.16(4), if the tax payer furnishes the returns within the timeline contemplated under Sec.16(5), Sec.16(4) losses its significance. Therefore, an interference is required as the petitioner is entitled to get input tax credit in the light of Sec.16(5).

In such circumstances, the petitioner is entitled to the reliefs. Accordingly, this writ petition is disposed of, quashing Ext.P1, with a direction to the 1st respondent to reconsider the matter and grant the benefits under Sec.16(5) of the CGST Act, if the petitioner is otherwise entitled to the same. Necessary orders in this regard shall be passed within a period of three months from the date of receipt of copy of this judgment, after affording an opportunity of hearing to the petitioner.

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