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2026 Supreme(Online)(Mad) 50507

IN THE HIGH COURT OF JUDICATURE AT MADRAS
Senthilkumar Ramamoorthy, J
Industrial Refractories – Appellant
Versus
State Tax Officer – Respondent
WP No. 20385 of 2026|WMP.Nos.21887 to 21889 of 2026



Advocates:
For the Appellants/Petitioners: Kanaga sundram
For the Respondents: R. Sethu Prabakaran

The imposition of a general penalty under Section 125 of the GST Act is not sustainable when the taxpayer has already paid the late fee for the belated filing of annual returns, as the late fee itself serves as a sufficient penalty for the default.

Headnote:The petitioner challenged an order imposing a general penalty for the belated filing of annual returns under the relevant GST enactments. The petitioner argued that as the returns were filed with the requisite late fee, the additional imposition of a general penalty under S. 125 of the GST Act was impermissible in law. The court examined the nature of penalty provisions and emphasized that the payment of late fees serves as the primary mechanism for defaults in filing. The core issue was whether a general penalty under S. 125 can be levied in addition to late fees for the late filing of annual returns. Relying on precedent, the court determined that late fee provisions are penal in nature, and thus subjecting the assessee to additional general penalties for the same procedural lapse violates the principles of equity and legislative intent. The court partly set aside the impugned order, specifically quashing the levy of general penalty while acknowledging that the late fee has already been satisfied.

Table of Content
1. challenge to general penalty levy for belated gst return filing. (Para 1 , 2 , 3)
2. section 125 penalty is barred where late fee is paid. (Para 4 , 5)

PRAYER: Writ Petition filed under Article 226 of the Constitution of India, to issue a Writ of Certiorari to call for records from the file of the First Respondent in impugned detailed notice to DRC 01 - proposed levy of general penalty for non-filing of annual returns dated 09.12.2024 ( digitally signed on 11.12.2024) and Summary of Show Cause Notice in FORM GST DRC-01 in Reference No. - ZD331224092148H in GSTIN/ID: 33APYPJ0717N1ZF dated 11.12.2024 and impugned order passed in GSTIN:33APYPJ0717N1ZF/2021-22 dated 09.12.2024 (digitally signed on 24.07.2025) and impugned Reference No.ZD3307252720589 in GSTIN/ID: 33APYPJ0717N1ZF dated 24.07.2025 passed for the F.Y.2021-22, and quash the same as impermissible in law, illegal, without jurisdiction and violative of principles of natural justice.

For Petitioner: Mr. Kanaga sundram

For R1 & R2: Mr. R. Sethu Prabakaran

Government Counsel (Tax)

ORDER

An order dated 11.12.2024 imposing late fee and general penalty for belated filing of annual returns is challenged in this writ petition.

2. Mr. R.Sethu Prabakaran, learned Government Counsel (Tax), accepts notice on behalf of respondents 1 & 2.

3. Learned counsel for the petitioner submits that the annual return was filed on 16.12.2025 along with late fee. Therefore, he contends that general penalty is not leviable under Section 125 of applicable GST enactments. He relies upon an earlier order of this Court dated 04.02.2025 in W.P.No.36614 of 2024, Tvl. Jainsons Castors & Industrial Products v. The Assistant Commissioner (ST), Ekkattuthangal, Assessment Circle.

4. Both in the judgment cited by learned counsel and in the judgment in M/s.Kandan Hardware Mart rep. By its Proprietor E.Palani vs. The Assistant Commissioner (ST) (FAC), Park Town Assessment Circle, Chennai – 600 003 [(2026) 38 Centax 332 (Mad.)], this Court held that imposition of late fee is penal in nature and therefore general penalty under Section 125 should not be imposed. Extending the benefit of said orders to the petitioner, the impugned order is set aside partly only insofar as penalty is concerned in view of the petitioner having paid the late fee.

5. The writ petition is disposed of on the above terms. Consequently, connected miscellaneous petitions are closed. There shall be no order as to costs.

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