Bombay High Court Sets Aside DSIR's Delay Rejection for Sedemac's R&D Tax Deduction Claim

In a significant ruling for companies claiming research and development deductions, the Bombay High Court has held that the Department of Scientific and Industrial Research (DSIR) cannot reject an application for Form 3CL solely on the ground of delay when the assessee has filed the mandatory audit report (Form 3CLA) within the income tax return due date.

A Division Bench of Justice B.P. Colabawalla and Justice Firdosh P. Pooniwalla was hearing a writ petition filed by Sedemac Mechatronics Limited challenging an order dated 25 October 2024, by which the DSIR rejected its applications for Form 3CL for Assessment Years 2018-19 and 2020-21 as being time-barred.

Background: The Dispute Over Timely Filing

Sedemac, a company engaged in manufacturing, had set up an in-house research and development facility to claim deduction under Section 35(2AB) of the Income Tax Act, 1961. For claiming this weighted deduction, a company must obtain a report from the DSIR in Form 3CL, which quantifies the eligible expenditure. One of the conditions under Rule 6(7A)(c) is that the company must furnish an audit report in Form 3CLA electronically to the DSIR on or before the due date for filing the income tax return.

For A.Y. 2018-19, Sedemac filed its Form 3CLA on 30 October 2018, a day before the return-filing deadline of 31 October 2018. For A.Y. 2020-21, it filed the form on 24 December 2020, well before the extended deadline of 15 February 2021 that was granted due to the COVID-19 pandemic. Nevertheless, the DSIR rejected the applications for Form 3CL, contending that the applications themselves were filed late—on 28 January 2020 and 25 February 2021 respectively.

Arguments: Compliance vs. Late Application

Petitioner's counsel Nishant Thakkar argued that Sedemac had fully complied with Rule 6(7A)(c) by submitting the audit report within the prescribed timeline. He further pointed out that the DSIR had registered itself on the income tax e-filing portal to receive Form 3CLA, and the department's own reply admitted that the forms filed by Sedemac could be accessed and viewed. Additionally, after the DSIR issued a communication on 30 May 2024 granting a final opportunity to submit required details by 30 June 2024, Sedemac responded on 19 June 2024—well within that deadline.

Opposing counsel Akhileshwar Sharma, representing the DSIR, relied on the department's records showing the date of application for Form 3CL as later than the due date. He also cited an admission by Sedemac in its petition that submission of certain details was delayed after receiving approval.

Legal Analysis: What Constitutes Timely Compliance?

The High Court examined the plain language of Rule 6(7A)(c) , which requires an assessee to "furnish electronically" the audit report in Form 3CLA to the DSIR "on or before the due date specified in Explanation 2 to sub-section (1) of section 139" . The court found that the DSIR 's own Annual Report for 2018-19 confirmed that it had registered as an external agency on the income tax e-filing website to receive Form 3CLA . The department also accepted that the forms filed by Sedemac were accessible on that portal.

The court concluded:

"It must therefore be accepted that uploading of Form 3CLA by an Assessee to its e-filing account on the website of the Income Tax Department, on or before the due date of filing of the Return of Income, satisfies the requirement of Rule 6(7A)(c) ."

Since it was undisputed that Sedemac had filed Form 3CLA within the due dates for both assessment years, the court held that the rejection based on delay was unsustainable.

Key Observations

The Bench made it clear that the substance of the compliance—submitting the audit report on time—cannot be disregarded merely because the DSIR's internal records showed a later date for a separate application. The court also noted that Sedemac had complied with the DSIR's request for additional information within the specific timeline provided.

Decision and Implications

Setting aside the impugned order to the extent it rejected Sedemac's applications for A.Y. 2018-19 and 2020-21, the court directed the DSIR to decide those applications on their merits and compute the expenditure eligible for deduction under Section 35(2AB) in accordance with law. For A.Y. 2019-20, since Sedemac's deduction had already been accepted, no direction was issued.

The ruling clarifies that for companies claiming in-house R&D deductions, the critical date is the filing of Form 3CLA, not the filing of the Form 3CL application itself. Taxpayers who have furnished their audit reports by the return due date can now confidently seek Form 3CL without the fear of a delay-based rejection.

The writ petition was disposed of with no order as to costs.