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2025 Supreme(Kar) 2444

IN THE HIGH COURT OF KARNATAKA AT BENGALURU
S.R.KRISHNA KUMAR, J.
Qualys Inc – Appellant
Versus
The Commissioner of Income Tax (International Taxation) Bengaluru – Respondent
Writ Petition No. 9841 of 2022
Decided On : 18-11-2025

Advocates Appeared:
For the Appellants : Percy Pardiwala, Ankur Pai Dhungat
For the Respondent: E.I. Sanmathi

A taxpayer can claim a refund of tax payments based on favorable Supreme Court rulings that redefine the taxability of income, irrespective of previous self-declarations.

Headnote:(A) Income Tax Act, 1961 - Sections 143(1), 244A, and 264 - Petition filed seeking to quash impugned order and for tax refund - Benchmark set by Supreme Court in Engineering Analysis Centre of Excellence Private Limited case established that payment for software does not constitute royalty taxable in India. (Paras 1-7)

(B) Legal Standing - A taxpayer can seek refunds if they declare income under the belief based on prevailing legal precedents that later change, as affirmed by the Supreme Court’s ruling, which is binding on lower courts. (Para 7)

(C) Administrative Error - The tax authority's rejection of revised claims based on incorrect self-reporting assumptions violates procedural fairness. (Paras 7-8)

Facts of the case:
The petitioner, having declared income as royalty under the guidance of previous court rulings, contends a Supreme Court judgment exonerating them from such tax obligations. (Para 6)

Findings of Court:
Petitioner’s reasoning for seeking refund is valid under developed jurisprudence, necessitating revisitation of the tax authority’s rejection. (Para 8)

Issues: The court examined the applicability of tax refund eligibility after a favorable Supreme Court ruling and administrative liabilities of tax authorities.

Ratio Decidendi: The court held that previous self-declared taxes do not bar future refunds based on subsequent legal clarifications and established that the tax authority's refusal lacked legal merit.

Result: Petition allowed; the impugned order set aside and remitted for reconsideration.

Table of Content
1. petitioner seeks relief from tax order. (Para 1 , 5)
2. basis for interpreting tax law and ruling. (Para 2)
3. arguments concerning tax refund and classifications. (Para 3 , 4)
4. court's observations on taxability and precedents. (Para 6 , 7 , 8)

ORDER :

1. In this petition, petitioner seeks for the following reliefs:-

“i. this Hon’ble Court may be pleased to issue a writ of Certiorari or a writ in the nature of Certiorari or any other appropriate writ, order or direction under Article 226 of the Constitution of India calling for the records of the Petitioner’s case and after examining the legality and validity thereof quash the impugned Order dated 04.02.2022 passed by the Respondent No.1 under Section 264 of the IT Act in DIN & Order No.ITBA/REV/F/REV7/2021-22/1039395687(1) for the AY 2019-20 vide ANNEXURE ‘J’.

ii. this Hon’ble Court may be pleased to issue a writ of Mandamus or a writ in the nature of Mandamus or any other appropriate writ, order or direction under Article 226 of the Constitution of India directing the Respondent No.3 to issue the eligible refund of taxes along with applicable interest under section 244A of the IT Act;

iii. issue any other writ, order or direction to which the Petitioner is found entitles to in the present facts and circumstances.”

2. Heard learned Senior counsel for the petitioner and learned counsel for the respondents and perused the material on record.

3. In addition to reiterating the various contentions urged in the memorandum of petition and referring to the material on record, learned Senior counsel for the petitioner submits that on 28.11.2019, the petitioner filed income tax returns, which was processed by respondent No.2, who issued a notice under Section 143 (1) of the Income Tax Act. It was pointed out that when the petitioner filed the said returns, the various High Courts had delivered judgments as regards taxability of the income tax classified as royalty on the Income Tax Act and on the basis of the said judgments, the petitioner filed returns to seek refund in the event the said issue is answered in favour of the assessee by the Apex Court. It is submitted that subsequently, the judgment of this Court in the case of CIT Vs. Samsung Electronics Co. Ltd. (2012) 345 ITR 494 was reversed by the Apex Court, which answered the issue in favour of the petitioner-assessee by holding that the amounts paid as resident Indian end users/distributors to non-resident computer software manufacturers/supplies as consideration for the resale/use of the computer software through end-user license agreement (EULA)/distribution agreements were not in the nature of royalty and that the same did not give rise to any taxable income in India and the persons referred to under Section 198 of the I.T. Act were not liable for TDS under Section 90 of the I.T. Act. It is accordingly submitted that pursuant to the aforesaid judgment of the Apex Court which attained finality and became conclusive and binding upon the respondents, petitioner filed revision application under Section 264 of the I.T. Act, which was rejected by the respondent by passing the impugned order at Annexure-J dated 04.02.2022, which is assailed in the present petition.

4. Per contra, learned counsel for the respondents would support the impugned order and submits that there is no merit in the petition and that the same is liable to be dismissed.

5. Before adverting to the rival submissions, it would be necessary to extract Income Tax Returns in particular, the notes appended to the Income Tax Returns, which is hereunder:

“Qualys Inc., US AY 2019-20 Notes to the return of Income for the financial year 2018-19

1. Background Qualys Inc ('Qualys'/ ‘the Company') is a company incorporated in the USA. The Company is engaged in providing Software as Service (‘SaaS’) to its clients across the world.

The Company is a 'tax resident’ of USA and holds a valid tax residency certificate (‘TRC’) issued by the US tax authorities, covering the

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