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2026 Supreme(Mad) 388

BEFORE THE MADURAI BENCH OF MADRAS HIGH COURT
KRISHNAN RAMASAMY, J.
 
M/s. Rajagopal And Co Rep. by its Partner V. Rajagopal – Petitioner
Versus
The Assistant Commissioner And Central Excise  - Respondent
W.P.(MD)No.2651 of 2026 & W.M.P.(MD)Nos.2240 & 2241 of 2026
Decided On : 03-02-2026
 

Advocates Appeared:
For the Petitioner: Mrs. A.L. Gandhimathi, Sr.counsel for Mr. C. Mahadevan Chinnadurai
For the Respondent: Mr. R. Gowri Shankar

The court ruled that taxpayers can avail Input Tax Credit on late filings due to exceptional circumstances, as amended provisions of the GST Act allowed for extended deadlines retroactively, quashing earlier tax demands.

Headnote:(A) Goods and Services Tax Act, 2017 - Section 16(4) and (5) - Input Tax Credit (ITC) - The petitioners challenged the reversal of their ITC claims by the respondent-Department, arguing that delays were due to financial constraints and other significant issues during the COVID-19 pandemic - The Court found the impugned orders unsustainable post the extension of ITC deadlines by the GST Council - The petitioners are thus entitled to avail ITC on returns filed before the newly stipulated deadline, quashing earlier orders. (Paras 10.1, 11, 12)

(B) Quashing of Orders - The Court restrained the respondent from proceeding based on the impugned orders related to limitation issues and directed de-freezing of bank accounts. (Paras 11, 12)

Table of Content
1. petitioner's challenge to itc reversal (Para 1)
2. precedent applies to petitioner's case (Para 2 , 4)
3. orders and directions regarding itc claim (Para 5)

ORDER :

KRISHNAN RAMASAMY, J.

1. This Writ petition has been filed by the petitioner/taxpayer, who is registered dealer on the files of the respondent-Department under the provisions of the Goods and Service Tax Act, 2017 (GST Act)/ Central Goods and Services Tax Act ( CGST Act) as the case may be, challenging the orders passed by the respondent-Department, whereby, their claim of ITC was reversed/negatived and consequently, the petitioners have been directed to pay tax/penalty/interest.

2. When this Writ Petition is taken up for hearing, the respective learned counsel for the petitioner and learned counsel for the respondent, would submit that the issue involved in the present Writ Petition, has been squarely covered by the common order of this Court, dated 17.10.2024 passed in W.P.Nos.25081 of 2023, etc., batch, wherein, this Court has categorically held in paragraphs 9 to 12 as under:

“9. The petitioners in all these Writ Petitions are registered dealers on the files of the respondent- Department under the provisions of the Goods and Service Tax Act, 2017/CGST Act 2017. Though the petitioners have filed GSTR-1 returns in time, however, insofar as claim of ITC is concerned, since the petitioners were faced with certain difficulties, such as Financial constraints (as there was complete lock down due to outbreak Covid-19) health related ailments, fire accidents, they were unable to file GSTR-3B returns, which prompted them not raising their claim ITC in time before the prescribed date. Whereas, the respondent-Department without considering such vital aspects and that reasons for the delay is not deliberate, issued the show cause notices to the petitioners, proposing to reverse the ITC availed and went to the extreme level of confirming the proposals contained in the show cause notices by passing the impugned orders,whereby, the claim made by the petitioners for ITC was reversed and the petitioners have been directed to tax/penalty/interest. Aggrieved against the impugned orders, the petitioners are before this Court by way of present Writ Petitions seeking for setting aside the impugned orders.

10. After the filing of these Writ Petitions, certain development took place, i.e. that 53rd GST Council Meeting was held on 22.06.2024, and during the said Meeting, the GST Council recommended for extension of the deadline for availing ITC on any invoice or debit note under Section 16 (4) of the CGST Act and this extension would be applicable to any GSTR-3B returns filed for the Fys 2017-18, 2018-19, 2019-20 and 2020-21 with a new deadline deemed to be as ''30.11.2021'', to which, the Presidential Assent was also obtained by the Government of India on 16.08.2024, whereby, the financial proposals of the Central Government for the Financial Year 2024-25 was given effect to vide Finance Act, (No.2) of 2024, and in view of the aforesaid enactment, the Ministry of Finance (Department of Revenue) Central Board of Indirect Taxes and Customs, issued a Notification, bearing No.17 of 2024-Central Tax, dated 27.09.2024, pursuant to which, a Circular No.237/31/2024-GST was issued by the Central Board of Indirect Taxes and Customs, which was addressed to all the Principal Chief Commissioners /Chief Commissioners/Principal Commissioners/Commissioners of Central Tax (All), thereby, clarifying the issues regarding implementation of provision of sub-section (5) and sub-section (6) in of CGST Act, 2017, the impugned orders are no longer sustainable and liable to be quashed. In this context, it would be apposite to refer to both (4) of the CGST Act, 2017, as well as amendment made to (4) by interpolations of sub-sections 16 (5) and (6), and by insertion of sub-section (5) to , which are extracted herein under:-

Section 16 (4)

''A registered person shall not be entitled to take

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